Scipy, numpy and friends

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  1. Scipy, Numpy and friends.Michele Mattioni - mattioni@ebi.ac.ukCompNeur group.http://www.ebi.ac.uk/~mattioni/pylab_pres/orhttps://github.com/mattions/pylab_pres EBI is…
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  • 1. Scipy, Numpy and friends.Michele Mattioni - mattioni@ebi.ac.ukCompNeur group.http://www.ebi.ac.uk/~mattioni/pylab_pres/orhttps://github.com/mattions/pylab_pres EBI is an Outstation of the European Molecular Biology Laboratory.
  • 2. Scipy, Numpy and friends by Michele Mattioni is licensed under CC BY-NC-SA 3.0.Permissions beyond the scope of this license may be available at https://github.com/mattions.
  • 3. Go here:http://www.ebi.ac.uk/~mattioni/pylab_pres/ or https://github.com/mattions/pylab_pres
  • 4. Scipy and Numpy - http://www.scipy.org Data structure for mathematical operation Collections of high level with speed in mind. mathematical operations: - regression - interpolation - optimization - integration
  • 5. Matplotlib - http://matplotlib.sourceforge.net/ - Display and plot you data quickly - Different kind of plot available
  • 6. Ipython - http://ipython.scipy.org - Enhanced python console - Trials and errors encouraged - Quick access to the help.
  • 7. Plot of an exponential function
  • 8. Difference between Console and Script Console Program - Quick to write - Slower to write - Messy to maintain - Easier to maintain
  • 9. HELP! Different ways to access help:Console: name_of_the _function?Online: http://docs.scipy.org/doc/Suggested:Tutorial http://www.scipy.org/Tentative_NumPy_Tutorial
  • 10. Numpy array
  • 11. Plotting
  • 12. Importing your data and visualize them
  • 13. Fitting the data
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